Execution times

tot.file = read.csv("Data/Tot_times_genes_20000.csv")
library(ggplot2)

The following data and plot analyse the execution time of COTAN tool using the automatic.COTAN.object.creation function.

ggplot(tot.file, aes(x = n.cells, y = times)) + 
  geom_line(aes(color = type)) + 
  scale_color_manual(values = c("darkred", "steelblue","pink"))

The scale for times are minutes.

print(sessionInfo())

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