COTAN V2.0 Datasets analysis

Schematic data-sets information

Number Data-set name Tissue Organism Initial cell number Original paper Database code Cell number after cleaning sc Method Labelled/Surface proteins
1 E14.5 Mouse Cortex Loo 2019 Brain mm 11069 📖 GSE123335 10864 Drop-seq NO
2 E13.5 Mouse Cortex Yuzwa 2017 Brain mm 1137 📖 GSE107122 1112 Drop-seq NO
3 E17.5 Mouse Cortex Yuzwa 2017 Brain mm 880 📖 GSE107122 874 Drop-seq NO
4 E13.5 Forebrain La Manno 2021 Brain mm 5376 📖 PRJNA637987 4981 10X Yes
5 E14.5 Forebrain La Manno 2021 Brain mm 5396 📖 PRJNA637987 5000 10X Yes
6 E15.0 Forebrain La Manno 2021 Brain mm 8987 📖 PRJNA637987 8562 10X Yes
7 E15.5 Forebrain La Manno 2021 Brain mm 2621 📖 PRJNA637987 2464 10X Yes
8 E17.0 Forebrain La Manno 2021 Brain mm 3108 📖 PRJNA637987 2941 10X Yes
9 E17.5 Forebrain La Manno 2021 Brain mm 2611 📖 PRJNA637987 2467 10X Yes
10 CD14+ PBMC H.s. 2612 📖 SRP073767 2434 10X NO
11 PBMC1 PBMC H.s. 5 527 10X website 3610 10X yes
12 PBMC2 PBMC H.s. 6574 10X website 5975 10X yes
13 PBMC3 PBMC H.s. 11715 10X website 10944 10X yes
14 PBMC4 PBMC H.s. 8258 10X website 6966 10X yes