COTAN V2.0 Datasets analysis
Schematic data-sets information
|
Number |
Data-set name |
Tissue |
Organism |
Initial cell number |
Original paper |
Database code |
Cell number after cleaning |
sc Method |
Labelled/Surface proteins |
|---|---|---|---|---|---|---|---|---|---|
|
1 |
E14.5 Mouse Cortex Loo 2019 |
Brain |
mm |
11069 |
GSE123335 |
10864 |
Drop-seq |
NO |
|
|
2 |
E13.5 Mouse Cortex Yuzwa 2017 |
Brain |
mm |
1137 |
GSE107122 |
1112 |
Drop-seq |
NO |
|
|
3 |
E17.5 Mouse Cortex Yuzwa 2017 |
Brain |
mm |
880 |
GSE107122 |
874 |
Drop-seq |
NO |
|
|
4 |
E13.5 Forebrain La Manno 2021 |
Brain |
mm |
5376 |
PRJNA637987 |
4981 |
10X v1 |
Yes |
|
|
5 |
E15.0 Forebrain La Manno 2021 |
Brain |
mm |
8987 |
PRJNA637987 |
8562 |
10X v1 |
Yes |
|
|
6 |
E17.5 Forebrain La Manno 2021 |
Brain |
mm |
2611 |
PRJNA637987 |
2467 |
10X v1 |
Yes |
|
|
7 |
Zheng 2017 CD14+ |
PBMC |
H.s. |
2612 |
SRP073767 |
2434 |
10X |
NO |
|
|
8 |
PBMC1 |
PBMC |
H.s. |
5 527 |
CITE-seq |
3610 |
10X |
yes |
|
|
9 |
PBMC2 |
PBMC |
H.s. |
6574 |
CITE-seq |
5975 |
10X |
yes |
|
|
10 |
PBMC3 |
PBMC |
H.s. |
11715 |
CITE-seq |
10944 |
10X |
yes |
|
|
11 |
PBMC4 |
PBMC |
H.s. |
8258 |
CITE-seq |
6966 |
10X |
yes |
|
|
12 |
Brown_PBMC 2023 |
PBMC |
H.s. |
10X v3 |
yes |
||||
|
12A |
Brown_PBMC_40 |
PBMC |
H.s. |
10X v3.1 3 Prime HT |
yes |
||||
|
12B |
Brown_PBMC_41 |
PBMC |
H.s. |
10X v3.1 3 Prime HT |
yes |
||||
|
12C |
Brown_PBMC_77 |
PBMC |
H.s. |
10X v3.1 3 Prime |
yes |
||||
|
16 |
MouseBrainOP |
Brain |
mm |
14249 |
SMARTer seq |
yes |
|||
|
17 |
Ding 2020 general |
Brain/PBMC |
H.s. mm |
- |
GSE132044 |
- |
no |
||
|
18 |
Ding_Brain1_SS2 |
Brain |
mm |
768 |
GSE132044 |
584 |
SmartSeq2 |
no |
|
|
19 |
Ding_Brain2_SS2 |
Brain |
mm |
768 |
GSE132044 |
680 |
SmartSeq2 |
no |
|
|
20 |
Ding_Brain1_V2 |
Brain |
mm |
1792 |
GSE132044 |
1586 |
10X V2 |
no |
|
|
18 |
Ding_Brain2_V2 |
Brain |
mm |
5372 |
GSE132044 |
4375 |
10X V2 |
no |
|
|
19 |
Arrigoni_2024 |
Cell lines |
H.s. |
10X V3 |
yes |
||||
|
20 |
Brain_Morabito 2021 |
Brain |
mm |
51327 |
GSE189033 |
51327 |
SPLiT-seq |
no |