COTAN V2.0 Datasets analysis

Schematic data-sets information

Number Data-set name Tissue Organism Initial cell number Original paper Database code Cell number after cleaning sc Method Labelled/Surface proteins
1 E14.5 Mouse Cortex Loo 2019 Brain mm 11069 📖 GSE123335 10864 Drop-seq NO
2 E13.5 Mouse Cortex Yuzwa 2017 Brain mm 1137 📖 GSE107122 1112 Drop-seq NO
3 E17.5 Mouse Cortex Yuzwa 2017 Brain mm 880 📖 GSE107122 874 Drop-seq NO
4 E13.5 Forebrain La Manno 2021 Brain mm 5376 📖 PRJNA637987 4981 10X Yes
5 E15.0 Forebrain La Manno 2021 Brain mm 8987 📖 PRJNA637987 8562 10X Yes
6 E17.5 Forebrain La Manno 2021 Brain mm 2611 📖 PRJNA637987 2467 10X Yes
7 CD14+ PBMC H.s. 2612 📖 SRP073767 2434 10X NO
8 PBMC1 PBMC H.s. 5 527 10X website 3610 10X yes
9 PBMC2 PBMC H.s. 6574 10X website 5975 10X yes
10 PBMC3 PBMC H.s. 11715 10X website 10944 10X yes
11 PBMC4 PBMC H.s. 8258 10X website 6966 10X yes